I defiantly underestimated dwc lol but since I'm here and still have both plants alive 'I'm going to do what ever it takes to get them through the flower phase.
I think your right I need to go back to the start and go again, empty res rinse and clean then what?
If it were me, I think I would use straight tap for a few days. Reason being that the chlorine/chloramine might kill whatever's going on with the roots. This is going to kill beneficial microbes in the process, but you'll be adding those back in once you start adding nutes again. It's kind of like chemo.
After a few days, I would dump the water, then fill with half RO and half tap water. Go half strength on the nutes, and don't add anything other than the grow nutrients. No CalMag, no molassis, etc...just grow nutes. Hopefully that'll get them back on track. As they start looking healthy and growing, I would bump up the nutes a little at a time, but not too much.
Again, this is what I would do. Some might agree, and others will probably troll me and call me an idiot LOL! But I'm using nothing but 70ppm tap water and Maxi Gro/Bloom, and everything's growing very well, so it is possible to get great results with the basics.
I'm hoping that helps! That's a pesky issue you've got going.