bubble bags for sure... I highly recommend you get all the seeds out first and do it over a g ood surface that you can scrape all the trichombs and shiz into your container.
I've heard that pollinated bud can actually be more potent than unpollinated bud... you wont be dissapointed with the hash bro. this is how people in other countries have been doing it for 1000s of years.
and yeah, you're also going to have 1st generation (or 2nd if you've grwn that strain in this area before) climatization.. which will cause the next generation to grow faster in the same climate, and flower on time
. it gets better and better and better as the years go on...
that's why breeding outdoors is much more ideal, even though it takes MUCH longer than breeding indoors, the results are much more dramatic... not saying indoor breeders aren't good, I love the strains that have resulted from it, just sayin if some of these breeders had time and the ability to grow outdoors they'd have some even more amazing shit.