Ok, i'm not an expert so i can't answer your question about whether it's more important to keep the roots warm as if it's more important than keeping the rest of the plants warm.
I can tell you a few things that I DO KNOW. That is first of all, you should use some kind of styrofoam or (polystyrene?) to insulate your pots from the cold ground to help keep them from cold temps. #2 the ideal temp for growing is between 70-75 degrees Farenheit. That is "ideal" & not what is required. I know over 90 will fry your plants. I am not very familiar with what is too low. But if you want to do well, then you don't want to approach what is too low or what is too high (90 F). Since you are growing in an outdoor shed then too hight wont be a problem in the winter months. So you need to worry about getting too cold. This can actually be a blessing in disguise. I say this because you can take care of your cold problem & help your plants @ the same time. You do this by heating your shed with a Propane heater. If you do some research about indoor grows you will realize that typically hight temps are the problem as opposed to cold temps. Also you will learn that CO2 supplementation is VERY good for plant growth. In very large grow operations CO2 generators are used. In small operations CO2 tanks are used. Anyways, a CO2 generator is essentially a propane or natural gas heater. But since heat is a problem for most grow rooms these CO2 generators are propane heaters optimized for maximum CO2 with minimum heat. Well in your situation (@ least thru the cold months) a regular propane heater will produce CO2 which will be a HUGE benefit for you plants & it will produce heat which you need to reach ideal growing temps.
Basically I say Get a good propane heater. You can keep you plants @ a healthy temp & @ the same time be giving them an awesome CO2 boost. It's win/win. & it will be well worth the money you spend on propane as long as you plan on doing this more than once.