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Coco has a lot better aeration than soil, which means that the coco holds more oxygen. A mix of coco and perlite is much harder to over water than soil :p It seems as though maybe the watering practices could be contributing. Watering the solo cups until run off before putting the seed in...

I forgot to ask about the coco, but I assumed you were using a coco that came properly prewashed and free of the salts that some brands come with that need hours or washing? I think it's fine to feed from the first set of serrated leaves, but by experimenting, you'll find what works best for...

How many sets of leaves if any were they getting before turning yellow/brown and dying? Does your coco have any nutrients mixed into it? Seedlings do not need nutrients until after their first set of true leaves, however unlike soil, coco needs nutrients provided to it. You should start them...

You say tropical but I assume you're not expecting any wild weather right? In regard to your situation, Transitioning them in and out won't harm them, unless the two environments are drastically different from each other. As for easing them in: You would ease them in, if it was hot...